Quick Start

Installation

pip install roma-analysis

Or from source:

git clone https://github.com/altyn-bulmers/pyroma.git
cd pyroma
pip install -e .

Example

import pyroma
roma = pyroma.ROMA()
roma.adata = adata

hallmarks_gmt_path = pyroma.genesets.use_hallmarks()
roma.gmt   = hallmarks_gmt_path

roma.compute()
roma.adata.uns['ROMA_active_modules']